Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs143168507 chr21:48083669 AAGGGAAGTC/A 5.16E-9 511 21.52 21.02 2.73 KM Plot
HNSC rs143657369 chr13:20376135 TTTTTTC/T 3.78E-5 512 26.3 16.97 22.82 KM Plot
HNSC rs144542188 chr1:36304521 C/CT 1.16E-13 506 21.48 24.25 3.02 KM Plot
HNSC rs144912549 chr1:36250984 A/T 9.73E-14 512 21.3 27.43 3.02 KM Plot
HNSC rs1450737 chr4:140307921 G/A 5.63E-6 512 20.73 26.87 18.43 KM Plot
HNSC rs145277575 chr21:47728158 C/T 8.61E-9 507 21.37 23.37 2.87 KM Plot
HNSC rs146847321 chr2:100013950 C/CCA 3.04E-8 515 22.5 20.15 7 KM Plot
HNSC rs147693035 chr15:31138494 TATGAA/T 1.01E-5 510 22.83 20 12.07 KM Plot
HNSC rs1478565 chr3:161027464 C/T 3.86E-5 513 24.63 24.07 17.53 KM Plot
HNSC rs148053572 chr1:36264476 C/T 9.73E-14 512 21.3 27.43 3.02 KM Plot
HNSC rs1487271 chr2:99831671 G/A 4.31E-8 513 6.83 19.27 22.33 KM Plot
HNSC rs148863150 chr21:47960789 G/A 3.6E-8 513 21.33 22.78 2.87 KM Plot
HNSC rs148983758 chr1:36336826 AT/A 2.64E-11 513 21.3 32.67 3.73 KM Plot
HNSC rs149218832 chr1:36331260 T/C 2.57E-11 510 21.27 33.1 3.73 KM Plot
HNSC rs149905877 chr1:36250613 C/T 7.25E-14 506 21.23 29.17 3.02 KM Plot